PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10019959m
Common NameCICLE_v10019959mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 478aa    MW: 52213.4 Da    PI: 9.0312
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10019959mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.3e-0581103123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ C+k F r  nL+ H r H
  Ciclev10019959m  81 FVCEVCNKGFQRDQNLQLHRRGH 103
                      89*******************88 PP

2zf-C2H213.80.00017158180123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC++C+k++  +s+ k H +t+
  Ciclev10019959m 158 WKCEKCSKVYAVQSDWKAHSKTC 180
                      58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.22E-680103No hitNo description
Gene3DG3DSA:3.30.160.601.0E-580103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.02181103IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9781103IPR007087Zinc finger, C2H2
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.2E-4146179IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.22E-6153178No hitNo description
SMARTSM00355120158178IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MFPPAAGAAI SNSTSLSEEA ASVSSGTRVQ DFGGLNLIAS TISPQQQSQK AKKKRSLPGN  60
PDPDAEVIAL SPKTLLATNR FVCEVCNKGF QRDQNLQLHR RGHNLPWKLK QRSNKDIIKK  120
KAYVCPEPSC VHHHPSRALG DLTGIKKHFC RKHGERKWKC EKCSKVYAVQ SDWKAHSKTC  180
GTREYRCDCG TLFSRKDSFI THRAFCDALA EESARLSANQ LATTINTNGH PLHIASQNHS  240
SSSLFPFTTT HIALTPWDPP QNPNPNRNNP NNDPHPNPLY IKSETHHFQI PPPLSSSQYF  300
QEPQAVAATT KALITSPYQD LHMRTQPSLN ASATSAHHMS ATALLQKAAT VGSATAAQQV  360
HQSMGHHMTT TQLNMGELAA FNSVSHISPD AYLGFTSGNL STWQKSDRLT RDFLGLTGDG  420
HGDENVNGGA NAGVNVRNAL TYTAGLDFHP FERGRTLLRP QGFGFAEPAE SETWGDC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006443977.10.0hypothetical protein CICLE_v10019959mg
RefseqXP_006479646.10.0PREDICTED: protein indeterminate-domain 12
SwissprotO227591e-131IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLA0A067FMJ90.0A0A067FMJ9_CITSI; Uncharacterized protein
TrEMBLV4TUR00.0V4TUR0_9R
STRINGPOPTR_0002s04880.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-122indeterminate(ID)-domain 12